bedtools

o+Class List

o+Class Hierarchy

o*Graphical Class Hierarchy

o+File List

|o*BEDTools-Version-2.12.0/src/annotateBed/annotateBed.cpp

|o*BEDTools-Version-2.12.0/src/annotateBed/annotateBed.h

|o*BEDTools-Version-2.12.0/src/annotateBed/annotateMain.cpp

|o*BEDTools-Version-2.12.0/src/bamToBed/bamToBed.cpp

|o*BEDTools-Version-2.12.0/src/bed12ToBed6/bed12ToBed6.cpp

|o*BEDTools-Version-2.12.0/src/bedToBam/bedToBam.cpp

|o*BEDTools-Version-2.12.0/src/bedToIgv/bedToIgv.cpp

|o*BEDTools-Version-2.12.0/src/closestBed/closestBed.cpp

|o*BEDTools-Version-2.12.0/src/closestBed/closestBed.h

|o*BEDTools-Version-2.12.0/src/closestBed/closestMain.cpp

|o*BEDTools-Version-2.12.0/src/complementBed/complementBed.cpp

|o*BEDTools-Version-2.12.0/src/complementBed/complementBed.h

|o*BEDTools-Version-2.12.0/src/complementBed/complementMain.cpp

|o*BEDTools-Version-2.12.0/src/coverageBed/coverageBed.cpp

|o*BEDTools-Version-2.12.0/src/coverageBed/coverageBed.h

|o*BEDTools-Version-2.12.0/src/coverageBed/coverageMain.cpp

|o*BEDTools-Version-2.12.0/src/cuffToTrans/cuffToTrans.cpp

|o*BEDTools-Version-2.12.0/src/cuffToTrans/cuffToTrans.h

|o*BEDTools-Version-2.12.0/src/cuffToTrans/cuffToTransMain.cpp

|o*BEDTools-Version-2.12.0/src/cuffToTrans/Fasta.cpp

|o*BEDTools-Version-2.12.0/src/cuffToTrans/Fasta.h

|o*BEDTools-Version-2.12.0/src/cuffToTrans/LargeFileSupport.h

|o*BEDTools-Version-2.12.0/src/cuffToTrans/split.cpp

|o*BEDTools-Version-2.12.0/src/cuffToTrans/split.h

|o*BEDTools-Version-2.12.0/src/fastaFromBed/Fasta.cpp

|o*BEDTools-Version-2.12.0/src/fastaFromBed/Fasta.h

|o*BEDTools-Version-2.12.0/src/fastaFromBed/fastaFromBed.cpp

|o*BEDTools-Version-2.12.0/src/fastaFromBed/fastaFromBed.h

|o*BEDTools-Version-2.12.0/src/fastaFromBed/fastaFromBedMain.cpp

|o*BEDTools-Version-2.12.0/src/fastaFromBed/LargeFileSupport.h

|o*BEDTools-Version-2.12.0/src/fastaFromBed/split.cpp

|o*BEDTools-Version-2.12.0/src/fastaFromBed/split.h

|o*BEDTools-Version-2.12.0/src/fjoin/fjoin.cpp

|o*BEDTools-Version-2.12.0/src/fjoin/fjoin.h

|o*BEDTools-Version-2.12.0/src/fjoin/fjoinMain.cpp

|o*BEDTools-Version-2.12.0/src/flankBed/flankBed.cpp

|o*BEDTools-Version-2.12.0/src/flankBed/flankBed.h

|o*BEDTools-Version-2.12.0/src/flankBed/flankBedMain.cpp

|o*BEDTools-Version-2.12.0/src/genomeCoverageBed/genomeCoverageBed.cpp

|o*BEDTools-Version-2.12.0/src/genomeCoverageBed/genomeCoverageBed.h

|o*BEDTools-Version-2.12.0/src/genomeCoverageBed/genomeCoverageMain.cpp

|o*BEDTools-Version-2.12.0/src/intersectBed/intersectBed.cpp

|o*BEDTools-Version-2.12.0/src/intersectBed/intersectBed.h

|o*BEDTools-Version-2.12.0/src/intersectBed/intersectMain.cpp

|o*BEDTools-Version-2.12.0/src/linksBed/linksBed.cpp

|o*BEDTools-Version-2.12.0/src/linksBed/linksBed.h

|o*BEDTools-Version-2.12.0/src/linksBed/linksMain.cpp

|o*BEDTools-Version-2.12.0/src/maskFastaFromBed/maskFastaFromBed.cpp

|o*BEDTools-Version-2.12.0/src/maskFastaFromBed/maskFastaFromBed.h

|o*BEDTools-Version-2.12.0/src/maskFastaFromBed/maskFastaFromBedMain.cpp

|o*BEDTools-Version-2.12.0/src/mergeBed/mergeBed.cpp

|o*BEDTools-Version-2.12.0/src/mergeBed/mergeBed.h

|o*BEDTools-Version-2.12.0/src/mergeBed/mergeMain.cpp

|o*BEDTools-Version-2.12.0/src/overlap/overlap.cpp

|o*BEDTools-Version-2.12.0/src/pairToBed/pairToBed.cpp

|o*BEDTools-Version-2.12.0/src/pairToBed/pairToBed.h

|o*BEDTools-Version-2.12.0/src/pairToBed/pairToBedMain.cpp

|o*BEDTools-Version-2.12.0/src/pairToPair/pairToPair.cpp

|o*BEDTools-Version-2.12.0/src/pairToPair/pairToPair.h

|o*BEDTools-Version-2.12.0/src/pairToPair/pairToPairMain.cpp

|o*BEDTools-Version-2.12.0/src/shuffleBed/shuffleBed.cpp

|o*BEDTools-Version-2.12.0/src/shuffleBed/shuffleBed.h

|o*BEDTools-Version-2.12.0/src/shuffleBed/shuffleBedMain.cpp

|o*BEDTools-Version-2.12.0/src/slopBed/slopBed.cpp

|o*BEDTools-Version-2.12.0/src/slopBed/slopBed.h

|o*BEDTools-Version-2.12.0/src/slopBed/slopBedMain.cpp

|o*BEDTools-Version-2.12.0/src/sortBed/sortBed.cpp

|o*BEDTools-Version-2.12.0/src/sortBed/sortBed.h

|o*BEDTools-Version-2.12.0/src/sortBed/sortMain.cpp

|o*BEDTools-Version-2.12.0/src/subtractBed/subtractBed.cpp

|o*BEDTools-Version-2.12.0/src/subtractBed/subtractBed.h

|o*BEDTools-Version-2.12.0/src/subtractBed/subtractMain.cpp

|o*BEDTools-Version-2.12.0/src/unionBedGraphs/intervalItem.h

|o*BEDTools-Version-2.12.0/src/unionBedGraphs/unionBedGraphs.cpp

|o*BEDTools-Version-2.12.0/src/unionBedGraphs/unionBedGraphs.h

|o*BEDTools-Version-2.12.0/src/unionBedGraphs/unionBedGraphsMain.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamAncillary.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamAncillary.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamAux.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamIndex.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamIndex.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamMultiReader.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamMultiReader.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamReader.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamReader.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamWriter.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BamWriter.h

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BGZF.cpp

|o*BEDTools-Version-2.12.0/src/utils/BamTools/BGZF.h

|o*BEDTools-Version-2.12.0/src/utils/bedFile/bedFile.cpp

|o*BEDTools-Version-2.12.0/src/utils/bedFile/bedFile.h

|o*BEDTools-Version-2.12.0/src/utils/bedFilePE/bedFilePE.cpp

|o*BEDTools-Version-2.12.0/src/utils/bedFilePE/bedFilePE.h

|o*BEDTools-Version-2.12.0/src/utils/bedGraphFile/bedGraphFile.cpp

|o*BEDTools-Version-2.12.0/src/utils/bedGraphFile/bedGraphFile.h

|o*BEDTools-Version-2.12.0/src/utils/fileType/fileType.cpp

|o*BEDTools-Version-2.12.0/src/utils/fileType/fileType.h

|o*BEDTools-Version-2.12.0/src/utils/genomeFile/genomeFile.cpp

|o*BEDTools-Version-2.12.0/src/utils/genomeFile/genomeFile.h

|o*BEDTools-Version-2.12.0/src/utils/gzstream/gzstream.C

|o*BEDTools-Version-2.12.0/src/utils/gzstream/gzstream.h

|o*BEDTools-Version-2.12.0/src/utils/lineFileUtilities/lineFileUtilities.cpp

|o*BEDTools-Version-2.12.0/src/utils/lineFileUtilities/lineFileUtilities.h

|o*BEDTools-Version-2.12.0/src/utils/sequenceUtilities/sequenceUtils.cpp

|o*BEDTools-Version-2.12.0/src/utils/sequenceUtilities/sequenceUtils.h

|o*BEDTools-Version-2.12.0/src/utils/stringUtilities/stringUtilities.h

|o*BEDTools-Version-2.12.0/src/utils/tabFile/tabFile.cpp

|o*BEDTools-Version-2.12.0/src/utils/tabFile/tabFile.h

|o*BEDTools-Version-2.12.0/src/utils/version/version.h

|o*BEDTools-Version-2.12.0/src/windowBed/windowBed.cpp

|o*BEDTools-Version-2.12.0/src/windowBed/windowBed.h

|\*BEDTools-Version-2.12.0/src/windowBed/windowMain.cpp

\+Directory Hierarchy