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Public Member Functions | Public Attributes

BamTools::BamWriter::BamWriterPrivate Struct Reference

Collaboration diagram for BamTools::BamWriter::BamWriterPrivate:
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List of all members.

Public Member Functions

const unsigned int CalculateMinimumBin (const int begin, int end) const
void Close (void)
void CreatePackedCigar (const vector< CigarOp > &cigarOperations, string &packedCigar)
void EncodeQuerySequence (const string &query, string &encodedQuery)
bool Open (const string &filename, const string &samHeader, const RefVector &referenceSequences, bool isWriteUncompressed)
void SaveAlignment (const BamAlignment &al)

Public Attributes

bool IsBigEndian
BgzfData mBGZF

Detailed Description

Definition at line 21 of file BamWriter.cpp.


The documentation for this struct was generated from the following file:

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