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Public Member Functions | Private Member Functions | Private Attributes

MaskFastaFromBed Class Reference

Collaboration diagram for MaskFastaFromBed:
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List of all members.

Public Member Functions

 MaskFastaFromBed (const string &fastaInFile, const string &bedFile, const string &fastaOutFile, bool softMask, char maskChar)

Private Member Functions

void MaskFasta ()
void PrettyPrintChrom (ofstream &out, string chrom, const string &sequence, int width)

Private Attributes

BedFile_bed
string _bedFile
string _fastaInFile
string _fastaOutFile
char _maskChar
bool _softMask

Detailed Description

Definition at line 26 of file maskFastaFromBed.h.


The documentation for this class was generated from the following files:

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