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Public Member Functions | Private Member Functions | Private Attributes

BedMerge Class Reference

Collaboration diagram for BedMerge:
Collaboration graph
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List of all members.

Public Member Functions

 BedMerge (string &bedFile, bool numEntries, int maxDistance, bool forceStrand, bool reportNames, bool reportScores, const string &scoreOp)
void MergeBed ()
void MergeBedStranded ()

Private Member Functions

void Report (string chrom, int start, int end, const vector< string > &names, const vector< string > &scores, int mergeCount)
void ReportMergedNames (const vector< string > &names)
void ReportMergedScores (const vector< string > &scores)
void ReportStranded (string chrom, int start, int end, const vector< string > &names, const vector< string > &scores, int mergeCount, string strand)

Private Attributes

BedFile_bed
string _bedFile
bool _forceStrand
int _maxDistance
bool _numEntries
bool _reportNames
bool _reportScores
string _scoreOp

Detailed Description

Definition at line 27 of file mergeBed.h.


The documentation for this class was generated from the following files:

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