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Public Member Functions | Private Member Functions | Private Attributes

BedCoverage Class Reference

Collaboration diagram for BedCoverage:
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List of all members.

Public Member Functions

 BedCoverage (string &bedAFile, string &bedBFile, bool forceStrand, bool writeHistogram, bool bamInput, bool obeySplits, bool eachBase)

Private Member Functions

void CollectCoverageBam (string bamFile)
void CollectCoverageBed ()
void ReportCoverage ()

Private Attributes

bool _bamInput
BedFile_bedA
string _bedAFile
BedFile_bedB
string _bedBFile
bool _eachBase
bool _forceStrand
bool _obeySplits
bool _writeHistogram

Detailed Description

Definition at line 34 of file coverageBed.h.


The documentation for this class was generated from the following files:

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